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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41168046_41168403_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41168046 - 41168403
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGTAA
5'SS Class:
major
3'SS Sequence:
CTTTATGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
ISDTKSKMSKAAVSDQERKK
Intron Amino Acid Position:
3422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
64.7
37.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.3
0.66
0.9
73.3
36.9
Minor 5ss
34.7
-1.7
3.5
46.2
49
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122