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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41170881_41171991_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41170881 - 41171991
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTGCCTTAAAT
Flanking Amino Acid:
DEGAWMKRLAVFSQPIISKA
Intron Amino Acid Position:
3281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
65.6
0.35
1
62.8
37.5
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
75.5
0.88
1.5
87.9
37

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122