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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41173079_41174606_R

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41173079 - 41174606
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTAATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTTTATTAATT
Flanking Amino Acid:
LGTSKSIYVERQRSALGECL
Intron Amino Acid Position:
3130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70
42.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.3
0.59
0.9
69.5
40.1
Minor 5ss
32.1
-2
3.1
40.4
45.5
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122