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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41174689_41176239_R

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41174689 - 41176239
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATAC
Flanking Amino Acid:
GQHQFGEDLILEDVQVSCYR
Intron Amino Acid Position:
3103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.7
0.87
0.6
88.9
20.4
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
59.6
0.28
1.9
76.33
39.5

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919