About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41182874_41185984_R

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41182874 - 41185984
Intron Length:
3111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTCTTTTATT
Flanking Amino Acid:
ASNKEKEMVTSLFCKLGVLV
Intron Amino Acid Position:
2986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.9
0.83
0.7
84.7
30.2
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
68.7
0.67
1.6
83.34
38.2

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122