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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41188297_41189066_R

Intron Information:

Intron Rank:
58
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41188297 - 41189066
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCCATCAG
5'SS Class:
weak_major
3'SS Sequence:
ATATAATAGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TAGACTGTAATT
Flanking Amino Acid:
LQQLIRYVDEINFLLSADGG
Intron Amino Acid Position:
2874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.3
44.6
42.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
44.6
-0.3
1.8
48.7
47.5
Minor 5ss
18.7
-3.6
3.6
22.9
30
Minor BPS
50.2
0.09
2
69.35
42.2

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122