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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41199675_41200947_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41199675 - 41200947
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATAAC
5'SS Class:
major
3'SS Sequence:
GTTTGCCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ACTCAAACAACT
Flanking Amino Acid:
RTRRISQTSQISVDAAHGYS
Intron Amino Acid Position:
2793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77.5
30.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
74.5
0.55
1
70.8
40.1
Minor 5ss
37.1
-1.5
2.8
45.4
36.8
Minor BPS
41
-0.6
2
60.1
42.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919