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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41201086_41202196_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41201086 - 41202196
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AACAATGTAATT
Flanking Amino Acid:
MKQYKLLSEKEKEIYRWPIK
Intron Amino Acid Position:
2747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
76.9
0.61
0.9
69.2
41.7
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
43.3
-0.4
2
56.84
40

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000011580
41098073 - 41403194
305122