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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41201086_41202933_R

Intron Information:

Intron Rank:
53
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
41201086 - 41202933
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATTCCTC
5'SS Class:
weak_minor
3'SS Sequence:
TGCATTTTTCTAG|G
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AACAATGTAATT
Flanking Amino Acid:
DKWSMEKVKSEKEIYRWPIK
Intron Amino Acid Position:
2705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.7
-0
1.2
45.9
42.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
76.9
0.61
0.9
69.2
41.7
Minor 5ss
55.3
0.18
2.7
78
36.5
Minor BPS
43.3
-0.4
2
56.84
40

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122