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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41206719_41207504_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41206719 - 41207504
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCTTTTGAAAT
Flanking Amino Acid:
LNEHAKMPLKLLTNHYERCW
Intron Amino Acid Position:
2589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.6
35.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82
0.72
0.8
80.7
31.3
Minor 5ss
35.4
-1.7
2.8
45.8
42.3
Minor BPS
55
0.24
1.5
70.27
40.6

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919