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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41209477_41210152_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41209477 - 41210152
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
TTTTATCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCT
Flanking Amino Acid:
IPFHMPTIAKDGTVVEPDMS
Intron Amino Acid Position:
2428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
85.8
28.4
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
68.7
0.67
1.5
84.06
36.9

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122