About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41210274_41211584_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41210274 - 41211584
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
LLGRCAPEMHLIHAGKGEAI
Intron Amino Acid Position:
2388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.3
0.86
0.6
89.2
19.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919