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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41212355_41213030_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41212355 - 41213030
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGTGTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTGTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
ATAAACTTAAAT
Flanking Amino Acid:
DFLRFAVFCNGESVEENANV
Intron Amino Acid Position:
2290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.3
0.27
1.1
52.1
41.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
74
0.54
1
72.1
38
Minor 5ss
34.9
-1.7
3.5
42.7
46.7
Minor BPS
59.7
0.38
1.7
75.23
40.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122