About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41214099_41215277_R

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41214099 - 41215277
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
CTCCTTCTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
LLENSSVGLGKGSTPLDVAA
Intron Amino Acid Position:
2209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
71.3
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
55.7
0.13
1.7
69.6
35.4
Minor 5ss
40.2
-1.1
3.4
55.7
43.1
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122