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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41216110_41219172_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41216110 - 41219172
Intron Length:
3063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATAAC
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
EEEKLMIRGLGDIMNNKVFY
Intron Amino Acid Position:
2127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.8
70.2
36.5
Minor 5ss
34.9
-1.7
2.8
36.9
40.6
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919