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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41219447_41222232_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41219447 - 41222232
Intron Length:
2786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTTCTTCACA
Flanking Amino Acid:
KPVDDDAKTSSTLQQLISDT
Intron Amino Acid Position:
2036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.6
0.8
0.7
80.5
30.9
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
70.7
0.65
1.7
81.19
34.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919