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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41222377_41224732_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41222377 - 41224732
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TAGTCTTTTACT
Flanking Amino Acid:
DFHEDLMTHCGIELDEDGTL
Intron Amino Acid Position:
1988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.5
0.84
0.8
85.6
33.6
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
68.2
0.65
1.6
80.71
41.4

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122