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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41224839_41224961_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41224839 - 41224961
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TCTTTCCTATGT
Flanking Amino Acid:
KEFRSPPQEQINMLLNFKDD
Intron Amino Acid Position:
1953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
78.3
0.64
1
82.7
26.3
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
47.7
-0
2.2
71.67
45.4

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122