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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41226555_41227535_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41226555 - 41227535
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAATGTT
5'SS Class:
major
3'SS Sequence:
TCTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATTGTATTT
Flanking Amino Acid:
FMALHIPEENRTIDILELTE
Intron Amino Acid Position:
1618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
79.7
33.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
34.3
-1.8
3.3
50
46.3
Minor BPS
46.6
-0.1
2.2
71.35
40.7

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122