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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41227763_41228490_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41227763 - 41228490
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TGGAATTCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TCTGTTGGAATT
Flanking Amino Acid:
VFQFELGRIKNVMPLSAGLF
Intron Amino Acid Position:
1543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
69
0.43
1
58.6
46.9
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
44.4
-0.3
2.1
63.05
42.5

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122