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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41230769_41231174_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
41230769 - 41231174
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATGCTCAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
VQEKPSRLKQRTKPDYSTSH
Intron Amino Acid Position:
1371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77.3
37.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
49.9
-0
1.7
59.7
41.4
Minor 5ss
32.4
-2
2.5
38
39.5
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122