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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41277567_41279269_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41277567 - 41279269
Intron Length:
1703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTAGTATC
5'SS Class:
major
3'SS Sequence:
TATGATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
ATTATCTAAATC
Flanking Amino Acid:
FPVVSFSAGIKVRFLLGGRH
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
80.2
32.8
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79.8
0.67
0.9
72.7
41.8
Minor 5ss
38.4
-1.3
2.7
48.1
34
Minor BPS
58.5
0.25
1.7
68.83
37

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919