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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41282493_41284177_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41282493 - 41284177
Intron Length:
1685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATAACC
Flanking Amino Acid:
LQTRLVNHVSSMRPNIFLGI
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.4
39.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.3
0.82
0.6
85.1
22.4
Minor 5ss
27.9
-2.5
3.5
38
46.8
Minor BPS
71.2
0.65
1.5
80.48
33.5

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122