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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41285074_41293665_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41285074 - 41293665
Intron Length:
8592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGATTT
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATCCTTTGAAT
Flanking Amino Acid:
SRLERLEASSGILEVLHCVL
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76
33.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
50.5
0.02
2.8
70.3
41.4
Minor BPS
64.9
0.55
1.4
78.84
36.8

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919