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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41301156_41303981_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41301156 - 41303981
Intron Length:
2826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCCTT
5'SS Class:
major
3'SS Sequence:
CATCTTACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGCATCTTACTC
Flanking Amino Acid:
STVFLFNRFIRGLDALSKKV
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
68.9
43.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.9
0.58
0.9
66.7
39
Minor 5ss
37.3
-1.4
3.5
55.9
48.3
Minor BPS
50.8
0
1.6
58.89
40.7

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039234
41098073 - 41403194
305122
ENSAPLT00000011580
41098073 - 41403194
305122
ENSAPLT00000042777
41098073 - 41399991
301919