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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41336490_41338328_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41336490 - 41338328
Intron Length:
1839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTCATTTTC
5'SS Class:
weak_major
3'SS Sequence:
CAATACAGGTGAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTATTTAATC
Flanking Amino Acid:
RSWSKSTLAIACWWTIHPAS
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.4
60.7
38.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
41.6
-0.4
1.7
40.2
43
Minor 5ss
42.8
-0.8
2.9
59.6
39.1
Minor BPS
70.5
0.62
1.4
76.47
33.3

Associated Gene:

Gene:
RYR2
Ensembl Gene ID:
ENSAPLG00000011026
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042777
41098073 - 41399991
301919
ENSAPLT00000011580
41098073 - 41403194
305122