Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41338476_41356166_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41338476 - 41356166

Intron Length:

17691

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTGAT

5'SS Class:

major

3'SS Sequence:

TTTTATCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTCTTTTTATCT

Flanking Amino Acid:

AEGLVDVEKWSAQGGGHRTL

Intron Amino Acid Position:

100

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

36.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.2

0.93

0.7

89.2

27.3

Minor 5ss

-1.1

3.2

48.8

47.3

Minor BPS

67.7

0.63

1.6

82.72

39.3

Associated Gene:

Gene:

RYR2

Ensembl Gene ID:

ENSAPLG00000011026

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042777

41098073 - 41399991

301919

ENSAPLT00000011580

41098073 - 41403194

305122