Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41399992_41403143_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

41399992 - 41403143

Intron Length:

3152

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAA|GCTTGGGAG

5'SS Class:

weak_major

3'SS Sequence:

TTTTTTTTGGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTTTTT

Flanking Amino Acid:

EGGDGAWEKKDDEVVLQCTA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.1

0.19

1.4

50.2

44.2

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

0.79

0.8

84.9

29.9

Minor 5ss

22.4

-3.2

29.5

37.4

Minor BPS

43.9

-0.3

3.5

78.47

38.5

Associated Gene:

Gene:

RYR2

Ensembl Gene ID:

ENSAPLG00000011026

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039234

41098073 - 41403194

305122

ENSAPLT00000011580

41098073 - 41403194

305122