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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41431577_41431995_R

Intron Information:

Intron Rank:
147666
Intron Class:
major
Intron Phase:
Intron Coordinates:
41431577 - 41431995
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTTTCTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
79
0.65
0.8
73
32
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
61.8
0.35
2
74.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026796
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035982
41431457 - 41433141
1685