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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41546283_41547133_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
41546283 - 41547133
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAGA
5'SS Class:
major
3'SS Sequence:
AAATTTGCAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TGTTTGTAAATT
Flanking Amino Acid:
ILRAAVENKADIIGLSGLIT
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
64.7
40.9
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
57.5
0.17
1
52.2
41.7
Minor 5ss
37.1
-1.5
3.2
48.6
47.2
Minor BPS
49.9
0.07
2.3
75.64
41.8

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798