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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41548707_41553181_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41548707 - 41553181
Intron Length:
4475

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCAACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
ATTTGCTCAACT
Flanking Amino Acid:
RAEQGSTEQEDPYNGTIVLA
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.9
65.6
45.5
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
71.7
0.49
0.9
66.3
39.5
Minor 5ss
21
-3.3
3.7
29.3
43.4
Minor BPS
66.2
0.59
2
86.92
38.6

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798