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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41554036_41554693_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41554036 - 41554693
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
AAAGCTTTTACT
Flanking Amino Acid:
EERLEYALIKGIEKYVTADT
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
71.2
40.6
Major BPS
70
0.5
1
67
39.8
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
31.7
-2.1
3
40.4
45.7
Minor BPS
53.4
0.19
1.7
68.11
42.8

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798