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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41554784_41557681_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41554784 - 41557681
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTTAT
U12 Branch Point Sequence:
CTATGGTTATCT
Flanking Amino Acid:
ATEKLLHYAQNHAQGGKKVI
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
66.2
0.4
1.3
57.4
49.1
Major PPT
93.1
0.97
0.6
92
18.6
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
44.9
-0.3
2.6
68.17
48.4

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798