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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41557823_41557937_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41557823 - 41557937
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGTAT
U12 Branch Point Sequence:
TTGTTTTTTCCA
Flanking Amino Acid:
HGVFLYHAIKYGMDMGIVNA
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
48.6
-0
1.4
49
44.8
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
41.6
-0.6
3.5
65.78
41.1

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798