Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41561921_41563008_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41561921 - 41563008

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAG

5'SS Class:

major

3'SS Sequence:

AAATCTTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTACAAAAAT

Flanking Amino Acid:

SLSEGYMLLSGLEPFRIGPY

Intron Amino Acid Position:

425

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.9

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

0.36

1.1

68.7

41.2

Minor 5ss

30.7

-2.2

3.1

38.3

46.6

Minor BPS

49.4

0.04

2.2

79.59

41.7

Associated Gene:

Gene:

MTR

Ensembl Gene ID:

ENSAPLG00000009934

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010447

41534881 - 41579678

44798