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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41563086_41564137_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41563086 - 41564137
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAAT
5'SS Class:
major
3'SS Sequence:
TTCTGTAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
CTTTCTGTAATA
Flanking Amino Acid:
GCCGTTPEHIRKIAEAVRSC
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
78.1
38.2
Major BPS
74
0.6
1
65.6
41.1
Major PPT
75.5
0.57
1
69.7
39.5
Minor 5ss
41.9
-0.9
3
59.8
44.7
Minor BPS
61.2
0.35
2
74.34
38.4

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798