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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41564206_41564989_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41564206 - 41564989
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AATACTTTATTT
Flanking Amino Acid:
TPEVTAKHIKSFALDGLVNV
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
82.4
29.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.3
0.77
0.7
78.7
27
Minor 5ss
41.2
-1
2.9
57.1
47.2
Minor BPS
58
0.33
1.6
72.23
38.9

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798