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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41565489_41568814_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41565489 - 41568814
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATGTTTTTAATC
Flanking Amino Acid:
VISVSHSKPLCIGLNCALGA
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.5
0.53
1
65.7
44.1
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
70.5
0.62
1.1
71.62
34

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798