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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41568910_41569275_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41568910 - 41569275
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ATTTAATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTCATTTAATA
Flanking Amino Acid:
EEEYAPRPIFVSGTIVDKSG
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.8
0.47
1
68.2
41.9
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
62.7
0.39
1.5
70.67
35.2

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798