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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41569336_41570607_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41569336 - 41570607
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
ETVFDTANAKAALFSLHKLF
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
71.5
40.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.4
0.57
0.9
70.4
35.9
Minor 5ss
30.1
-2.3
3.1
38.3
46.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798