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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41570899_41571924_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41570899 - 41571924
Intron Length:
1026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CGTGTTGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAA
U12 Branch Point Sequence:
TTTCTCCCAACC
Flanking Amino Acid:
KAADDVTAQTGIKRYVAGSM
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
50.7
0.02
1.2
62.1
35.8
Major PPT
67
0.38
1.1
60.2
44.9
Minor 5ss
38.1
-1.3
3.4
55.9
48.3
Minor BPS
54.4
0.12
1.9
72.95
37.4

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798