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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41572970_41574889_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41572970 - 41574889
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTCTCTGTTATG
Flanking Amino Acid:
QPDIICDIHKEYLLSGADII
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
83.1
0.75
0.9
77.4
36.6
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
46.5
-0.4
2.3
58.34
44.1

Associated Gene:

Gene:
MTR
Ensembl Gene ID:
ENSAPLG00000009934
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010447
41534881 - 41579678
44798