Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41624598_41627974_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41624598 - 41627974

Intron Length:

3377

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCATCAGT

5'SS Class:

major

3'SS Sequence:

TTCTTTAATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TCTTCTTTAATT

Flanking Amino Acid:

DLIDYSKLNKDDPIGNINLA

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.4

65.5

45.9

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

0.74

0.9

82.1

33.2

Minor 5ss

36.6

-1.5

2.9

50.3

45.5

Minor BPS

84.4

1.16

91.31

32.6

Associated Gene:

Gene:

ACTN2

Ensembl Gene ID:

ENSAPLG00000008618

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030387

41594701 - 41660751

66051

ENSAPLT00000009119

41594701 - 41660721

66021