Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41644_44186_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41644 - 44186

Intron Length:

2543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

ATTTTGGTAAGT

Flanking Amino Acid:

RLEMKKFGVQVSIIQPGNYA

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

79.4

0.66

0.9

73.9

36.8

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

44.8

-0.3

2.7

73.16

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008530

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008857

38780 - 44534

5755