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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41675317_41676737_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41675317 - 41676737
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGCATTTAAAG
Flanking Amino Acid:
AVDRDTFFAIGCTGLEELMG
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
52.2
-0
1.7
59.17
42.3

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259