About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41676955_41677913_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41676955 - 41677913
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCAC
5'SS Class:
major
3'SS Sequence:
TGTTTCTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATTTTTAACT
Flanking Amino Acid:
AQKCLEWLIHRFHIHLYNQD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
65.1
41
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.8
0.56
0.9
74.4
35.5
Minor 5ss
38.2
-1.3
3.1
50.6
45.9
Minor BPS
73.6
0.82
1.1
80.1
35.3

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259