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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41679406_41679874_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41679406 - 41679874
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGAA
5'SS Class:
major
3'SS Sequence:
TCTCTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TATGTCAAAATT
Flanking Amino Acid:
VSMLLPYIQKGLKSSIQDYR
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
68.7
38.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
82.2
0.72
0.7
76.4
32.2
Minor 5ss
36.5
-1.5
3.4
49.1
47.1
Minor BPS
47.7
-0.1
2
69.2
42.2

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259