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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41683411_41684586_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41683411 - 41684586
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
ATCTGTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGACTCTGAAAT
Flanking Amino Acid:
SLSQSCGKYRFLEDSDTSLL
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.9
43.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.8
0.63
0.9
74.2
39.7
Minor 5ss
33.3
-1.9
2.9
33.2
41.9
Minor BPS
53.8
0.2
1.6
69.71
40.1

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259