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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41684695_41685115_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41684695 - 41685115
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
TGATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTCTCTGATT
Flanking Amino Acid:
HLKDVIKTSKEGFDQSFIEE
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
79
0.72
1
69
38.9
Major PPT
83.5
0.75
0.8
81.5
36
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
67.9
0.65
1.6
87.59
31.4

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259