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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_41685212_41686298_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41685212 - 41686298
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GATTAATTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTGATTAATT
Flanking Amino Acid:
VVMSAFSALEIFRKQVNPEV
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.6
0.53
1
62.9
46.9
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
60.6
0.41
2
80.74
41.5

Associated Gene:

Gene:
HEATR1
Ensembl Gene ID:
ENSAPLG00000008015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008453
41675148 - 41712406
37259